Index

A

Aestivation (C++ class), [1], [2] Aestivation::aes_F (C++ member) Aestivation::Aestivation (C++ function), [1], [2] Aestivation::hide (C++ function), [1], [2] Aestivation::is_hide_time (C++ function), [1], [2] Aestivation::is_wake_time (C++ function), [1], [2] Aestivation::mu_aes (C++ member) Aestivation::psi (C++ member) Aestivation::t_hide1 (C++ member) Aestivation::t_hide2 (C++ member) Aestivation::t_wake1 (C++ member)

Aestivation::t_wake2 (C++ member) Aestivation::wake (C++ function), [1], [2] AestivationParams (C++ struct), [1], [2] AestivationParams::mu_aes (C++ member), [1], [2] AestivationParams::psi (C++ member), [1], [2] AestivationParams::t_hide1 (C++ member), [1], [2] AestivationParams::t_hide2 (C++ member), [1], [2] AestivationParams::t_wake1 (C++ member), [1], [2] AestivationParams::t_wake2 (C++ member), [1], [2] AreaParams (C++ struct), [1], [2] AreaParams::num_pat (C++ member), [1], [2]

B

BoundaryStrategy (C++ class), [1], [2] BoundaryStrategy::BoundaryStrategy (C++ function), [1], [2] BoundaryStrategy::distance (C++ function), [1], [2] BoundaryStrategy::relative_pos (C++ function), [1], [2] BoundaryStrategy::side_x (C++ member), [1], [2]

BoundaryStrategy::side_y (C++ member), [1], [2] BoundaryStrategy::~BoundaryStrategy (C++ function), [1], [2] BoundaryType (C++ enum), [1] BoundaryType::Edge (C++ enumerator), [1] BoundaryType::Toroid (C++ enumerator), [1]

C

check_bounds (C++ function), [1] check_interval (C++ function), [1] constants (C++ type)

constants::max_dev (C++ member), [1] constants::num_gen (C++ member), [1] constants::pi (C++ member), [1]

D

Dispersal (C++ class), [1], [2] Dispersal::adults_disperse (C++ function), [1], [2] Dispersal::boundary_strategy (C++ member), [1], [2] Dispersal::connec_indices (C++ member), [1], [2] Dispersal::connec_weights (C++ member), [1], [2] Dispersal::disp_rate (C++ member), [1], [2] Dispersal::Dispersal (C++ function), [1], [2] Dispersal::F_dispersing_out (C++ function), [1], [2] Dispersal::M_dispersing_out (C++ function), [1], [2] Dispersal::max_disp (C++ member), [1], [2] Dispersal::set_connecs (C++ function), [1], [2] Dispersal::~Dispersal (C++ function), [1], [2]

DispersalParams (C++ struct), [1], [2] DispersalParams::disp_rate (C++ member), [1], [2] DispersalParams::max_disp (C++ member), [1], [2] DispersalType (C++ enum), [1] DispersalType::DistanceKernel (C++ enumerator), [1] DispersalType::Radial (C++ enumerator), [1] DistanceKernelDispersal (C++ class), [1], [2] DistanceKernelDispersal::adults_disperse (C++ function), [1], [2] DistanceKernelDispersal::compute_connecs (C++ function) DistanceKernelDispersal::DistanceKernelDispersal (C++ function), [1], [2] DistanceKernelDispersal::set_connecs (C++ function), [1], [2] DistanceKernelDispersal::~DistanceKernelDispersal (C++ function), [1], [2]

E

EdgeBoundaryStrategy (C++ class), [1], [2] EdgeBoundaryStrategy::distance (C++ function), [1], [2]

EdgeBoundaryStrategy::EdgeBoundaryStrategy (C++ function), [1], [2] EdgeBoundaryStrategy::relative_pos (C++ function), [1], [2] EdgeBoundaryStrategy::~EdgeBoundaryStrategy (C++ function), [1], [2]

F

file_read_and_validate_type (C++ function), [1]

G

GDRelease (C++ class), [1], [2] GDRelease::GDRelease (C++ function), [1], [2] GDRelease::is_release_time (C++ function), [1], [2] GDRelease::num_driver_M (C++ member), [1], [2]

GDRelease::put_driver_sites (C++ function), [1], [2] GDRelease::release_gene_drive (C++ function), [1], [2] GDRelease::release_times (C++ member), [1], [2] GDRelease::select_driver_sites (C++ function), [1], [2] GDRelease::~GDRelease (C++ function), [1], [2]

I

InheritanceParams (C++ struct), [1], [2] InheritanceParams::e (C++ member), [1], [2] InheritanceParams::gamma (C++ member), [1], [2] InheritanceParams::xi (C++ member), [1], [2] InitialPopsParams (C++ struct), [1], [2] InitialPopsParams::initial_WF (C++ member), [1], [2] InitialPopsParams::initial_WJ (C++ member), [1], [2] InitialPopsParams::initial_WM (C++ member), [1], [2] InitialPopsParams::initial_WV (C++ member), [1], [2] InputParams (C++ struct), [1], [2] InputParams::alpha0_mean (C++ member), [1], [2] InputParams::alpha0_variance (C++ member), [1], [2] InputParams::alpha1 (C++ member), [1], [2] InputParams::amp (C++ member), [1], [2] InputParams::beta (C++ member), [1], [2] InputParams::comp_power (C++ member), [1], [2] InputParams::disp_rate (C++ member), [1], [2] InputParams::driver_start (C++ member), [1], [2] InputParams::e (C++ member), [1], [2] InputParams::gamma (C++ member), [1], [2] InputParams::initial_WF (C++ member), [1], [2] InputParams::initial_WJ (C++ member), [1], [2] InputParams::initial_WM (C++ member), [1], [2] InputParams::initial_WV (C++ member), [1], [2] InputParams::max_disp (C++ member), [1], [2] InputParams::max_t (C++ member), [1], [2] InputParams::min_dev (C++ member), [1], [2] InputParams::mu_a (C++ member), [1], [2] InputParams::mu_aes (C++ member), [1], [2]

InputParams::mu_j (C++ member), [1], [2] InputParams::num_driver_M (C++ member), [1], [2] InputParams::num_driver_sites (C++ member), [1], [2] InputParams::num_pat (C++ member), [1], [2] InputParams::num_runs (C++ member), [1], [2] InputParams::psi (C++ member), [1], [2] InputParams::rec_end (C++ member), [1], [2] InputParams::rec_interval_global (C++ member), [1], [2] InputParams::rec_interval_local (C++ member), [1], [2] InputParams::rec_sites_freq (C++ member), [1], [2] InputParams::rec_start (C++ member), [1], [2] InputParams::resp (C++ member), [1], [2] InputParams::set_label (C++ member), [1], [2] InputParams::t_hide1 (C++ member), [1], [2] InputParams::t_hide2 (C++ member), [1], [2] InputParams::t_wake1 (C++ member), [1], [2] InputParams::t_wake2 (C++ member), [1], [2] InputParams::theta (C++ member), [1], [2] InputParams::xi (C++ member), [1], [2] InputRainfall (C++ class), [1], [2] InputRainfall::alpha (C++ function), [1], [2] InputRainfall::InputRainfall (C++ function), [1], [2] InputRainfall::rainfall (C++ member) InputRainfall::resp (C++ member) InputRainfall::~InputRainfall (C++ function), [1], [2] InputRainfallParams (C++ struct), [1], [2] InputRainfallParams::alpha1 (C++ member), [1], [2] InputRainfallParams::rainfall (C++ member), [1], [2] InputRainfallParams::resp (C++ member), [1], [2]

L

LifeParams (C++ struct), [1], [2] LifeParams::beta (C++ member), [1], [2] LifeParams::comp_power (C++ member), [1], [2]

LifeParams::min_dev (C++ member), [1], [2] LifeParams::mu_a (C++ member), [1], [2] LifeParams::mu_j (C++ member), [1], [2] LifeParams::theta (C++ member), [1], [2]

M

max_dev (C++ member) Model (C++ class), [1], [2] Model::adults_die (C++ function) Model::aestivation (C++ member) Model::alpha0 (C++ function) Model::alpha0_mean (C++ member) Model::alpha0_variance (C++ member) Model::calculate_tot_F (C++ function), [1], [2] Model::calculate_tot_F_gen (C++ function), [1], [2] Model::calculate_tot_J (C++ function), [1], [2] Model::calculate_tot_M (C++ function), [1], [2] Model::calculate_tot_V (C++ function), [1], [2] Model::day_sim (C++ member) Model::dev_duration_probs (C++ member) Model::dispersal (C++ member) Model::gd_release (C++ member) Model::get_alpha (C++ function), [1], [2] Model::get_day (C++ function), [1], [2] Model::get_sites (C++ function), [1], [2] Model::inher_fraction (C++ member) Model::initial_pops (C++ member) Model::initiate (C++ function), [1], [2]

Model::juv_eclose (C++ function) Model::juv_get_older (C++ function) Model::lay_eggs (C++ function) Model::min_dev (C++ member) Model::Model (C++ function), [1], [2], [3], [4], [5] Model::num_pat (C++ member) Model::populate_sites (C++ function) Model::run (C++ function), [1], [2] Model::run_step (C++ function) Model::seasonality (C++ member) Model::set_dev_duration_probs (C++ function) Model::side_x (C++ member) Model::side_y (C++ member) Model::sites (C++ member) Model::virgins_mate (C++ function) Model::~Model (C++ function), [1], [2] ModelParams (C++ struct), [1], [2] ModelParams::aes (C++ member), [1], [2] ModelParams::area (C++ member), [1], [2] ModelParams::disp (C++ member), [1], [2] ModelParams::initial (C++ member), [1], [2] ModelParams::life (C++ member), [1], [2] ModelParams::rel (C++ member), [1], [2]

N

num_gen (C++ member)

P

Patch (C++ class), [1], [2] Patch::add_driver_M (C++ function), [1], [2] Patch::adults_die (C++ function), [1], [2] Patch::alpha0 (C++ member) Patch::calculate_tot_F (C++ function), [1], [2] Patch::calculate_tot_J (C++ function), [1], [2] Patch::calculate_tot_M (C++ function), [1], [2] Patch::calculate_tot_V (C++ function), [1], [2] Patch::comp (C++ member) Patch::coords (C++ member) Patch::F (C++ member) Patch::F_disperse_in (C++ function), [1], [2] Patch::F_disperse_out (C++ function), [1], [2] Patch::F_hide (C++ function), [1], [2] Patch::F_wake (C++ function), [1], [2] Patch::get_coords (C++ function), [1], [2] Patch::get_F (C++ function), [1], [2] Patch::get_F_fem_gen (C++ function), [1], [2] Patch::get_M (C++ function), [1], [2] Patch::J (C++ member) Patch::juv_eclose (C++ function), [1], [2]

Patch::juv_get_older (C++ function), [1], [2] Patch::lay_eggs (C++ function), [1], [2] Patch::M (C++ member) Patch::M_disperse_in (C++ function), [1], [2] Patch::M_disperse_out (C++ function), [1], [2] Patch::mate_rate (C++ member) Patch::model (C++ member) Patch::params (C++ member) Patch::Patch (C++ function), [1], [2], [3], [4], [5] Patch::populate (C++ function), [1], [2] Patch::update_comp (C++ function), [1], [2] Patch::update_mate (C++ function), [1], [2] Patch::V (C++ member) Patch::virgins_mate (C++ function), [1], [2] pi (C++ member) Point (C++ struct), [1], [2] Point::x (C++ member), [1], [2] Point::y (C++ member), [1], [2] ProgressionParams (C++ struct), [1], [2] ProgressionParams::max_t (C++ member), [1], [2] ProgressionParams::num_runs (C++ member), [1], [2]

R

RadialDispersal (C++ class), [1], [2] RadialDispersal::adults_disperse (C++ function), [1], [2] RadialDispersal::compute_connecs (C++ function) RadialDispersal::compute_distances_site (C++ function) RadialDispersal::compute_interval_union (C++ function) RadialDispersal::connec_weights_sum (C++ member) RadialDispersal::get_sorted_positions (C++ function) RadialDispersal::RadialDispersal (C++ function), [1], [2] RadialDispersal::set_connecs (C++ function), [1], [2] RadialDispersal::wrap_around (C++ function) RadialDispersal::~RadialDispersal (C++ function), [1], [2] random_binomial (C++ function), [1], [2], [3] random_discrete (C++ function), [1], [2], [3] random_lognormal (C++ function), [1], [2], [3] random_multinomial (C++ function), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11] random_poisson (C++ function), [1], [2], [3] random_real (C++ function), [1], [2], [3] RandomGDRelease (C++ class), [1], [2] RandomGDRelease::num_driver_sites (C++ member) RandomGDRelease::RandomGDRelease (C++ function), [1], [2] RandomGDRelease::select_driver_sites (C++ function) RandomGDRelease::~RandomGDRelease (C++ function), [1], [2] rd (C++ member) read_and_validate_type (C++ function), [1] Record (C++ class), [1], [2] Record::coord_list (C++ member) Record::global_data (C++ member) Record::is_rec_global_time (C++ function), [1], [2] Record::is_rec_local_time (C++ function), [1], [2]

Record::local_data (C++ member) Record::next_global_day (C++ member) Record::next_local_day (C++ member) Record::os1 (C++ member) Record::os2 (C++ member) Record::os3 (C++ member) Record::output_totals (C++ function), [1], [2] Record::rec_end (C++ member) Record::rec_interval_global (C++ member) Record::rec_interval_local (C++ member) Record::rec_sites_freq (C++ member) Record::rec_start (C++ member) Record::Record (C++ function), [1], [2] Record::record_coords (C++ function), [1], [2] Record::record_global (C++ function), [1], [2] Record::record_local (C++ function), [1], [2] Record::rep_label (C++ member) Record::set_label (C++ member) Record::~Record (C++ function), [1], [2] RecordParams (C++ struct), [1], [2] RecordParams::rec_end (C++ member), [1], [2] RecordParams::rec_interval_global (C++ member), [1], [2] RecordParams::rec_interval_local (C++ member), [1], [2] RecordParams::rec_sites_freq (C++ member), [1], [2] RecordParams::rec_start (C++ member), [1], [2] RecordParams::set_label (C++ member), [1], [2] ReleaseParams (C++ struct), [1], [2] ReleaseParams::num_driver_M (C++ member), [1], [2] ReleaseParams::num_driver_sites (C++ member), [1], [2] ReleaseParams::release_times (C++ member), [1], [2]

S

SchedGDRelease (C++ class), [1], [2] SchedGDRelease::release_sites (C++ member) SchedGDRelease::SchedGDRelease (C++ function), [1], [2] SchedGDRelease::select_driver_sites (C++ function) SchedGDRelease::~SchedGDRelease (C++ function), [1], [2] Seasonality (C++ class), [1], [2] Seasonality::alpha (C++ function), [1], [2] Seasonality::alpha1 (C++ member), [1], [2] Seasonality::Seasonality (C++ function), [1], [2] Seasonality::~Seasonality (C++ function), [1], [2] set1 (C++ member), [1] set10 (C++ member), [1] set11 (C++ member), [1] set12 (C++ member), [1] set13 (C++ member), [1] set14 (C++ member), [1] set15 (C++ member), [1] set16 (C++ member), [1] set17 (C++ member), [1] set18 (C++ member), [1] set2 (C++ member), [1] set3 (C++ member), [1] set4 (C++ member), [1] set5 (C++ member), [1] set6 (C++ member), [1] set7 (C++ member), [1] set8 (C++ member), [1] set9 (C++ member), [1] Simulation (C++ class), [1], [2]

Simulation::alpha0_mean (C++ member) Simulation::alpha0_variance (C++ member) Simulation::boundary_type (C++ member) Simulation::disp_type (C++ member) Simulation::inher_fraction (C++ member) Simulation::input_rainfall_params (C++ member) Simulation::max_t (C++ member) Simulation::model_params (C++ member) Simulation::num_runs (C++ member) Simulation::rec_params (C++ member) Simulation::release_sites (C++ member) Simulation::run_reps (C++ function), [1], [2] Simulation::set_boundary_type (C++ function), [1], [2] Simulation::set_coords (C++ function), [1], [2] Simulation::set_dispersal_type (C++ function), [1], [2] Simulation::set_inheritance (C++ function), [1], [2] Simulation::set_rainfall (C++ function), [1], [2] Simulation::set_release_times (C++ function), [1], [2] Simulation::Simulation (C++ function), [1], [2] Simulation::sine_rainfall_params (C++ member) Simulation::sites_coords (C++ member) Simulation::~Simulation (C++ function), [1], [2] SineRainfall (C++ class), [1], [2] SineRainfall::alpha (C++ function), [1], [2] SineRainfall::amp (C++ member) SineRainfall::SineRainfall (C++ function), [1], [2] SineRainfall::~SineRainfall (C++ function), [1], [2] SineRainfallParams (C++ struct), [1], [2] SineRainfallParams::alpha1 (C++ member), [1], [2] SineRainfallParams::amp (C++ member), [1], [2]

T

ToroidalBoundaryStrategy (C++ class), [1], [2] ToroidalBoundaryStrategy::distance (C++ function), [1], [2]

ToroidalBoundaryStrategy::relative_pos (C++ function), [1], [2] ToroidalBoundaryStrategy::ToroidalBoundaryStrategy (C++ function), [1], [2] ToroidalBoundaryStrategy::~ToroidalBoundaryStrategy (C++ function), [1], [2]