Struct InputParams

Struct InputParams#

Struct Documentation#

struct InputParams

Input parameters for the simulation.

Public Members

int num_runs

Number of simulation replicates to run.

int max_t

Maximum simulated time (in days).

int num_pat

Number of population sites chosen for the simulation.

double mu_j

Juvenile density independent mortality rate per day.

double mu_a

Adult mortality rate per day.

double beta

Parameter that controls mating rate.

double theta

Average egg laying rate of wildtype adult females (eggs per day).

double comp_power

Parameter that controls the juvenile survival probability.

int min_dev

Minimum development time for a juvenile (in days).

double gamma

Rate of r2 allele formation from W/D meiosis.

double xi

Somatic Cas9 expression fitness cost.

double e

Homing rate in females.

int driver_start

Time to start releasing drive alleles into the mosquito population.

int num_driver_M

Number of drive heterozygous (WD) adult male mosquitoes per release.

int num_driver_sites

Number of gene drive release sites per year.

double disp_rate

Adult dispersal rate.

double max_disp

Maximum dispersal distance at which two sites are connected.

double psi

Aestivation rate.

double mu_aes

Aestivation mortality rate.

int t_hide1

Start day of aestivation-hiding period (exclusive).

int t_hide2

End day of aestivation-hiding period (inclusive).

int t_wake1

Start day of aestivation-waking period (exclusive).

int t_wake2

End day of aestivation-waking period (inclusive).

double alpha0_mean

Mean of the baseline contribution to the carrying capacity.

double alpha0_variance

Variance of the baseline contribution to the carrying capacity.

double alpha1

Rainfall contribution factor to carrying capacity.

double amp

Amplitude of rainfall fluctuations.

double resp

Carrying capacity’s responsiveness to rainfall contribution.

int initial_WJ = 10000

Number of initial juvenile mosquitoes with wild homozygous (WW) genotype for each age group.

int initial_WM = 50000

Number of initial adult male mosquitoes with wild homozygous (WW) genotype.

int initial_WV = 10000

Number of initial adult unmated female (virgin) mosquitoes with wild homozygous (WW) genotype.

int initial_WF = 40000

Number of initial adult mated female mosquitoes with wild homozygous (WW) genotype.

int rec_start

Start time for the data recording window (inclusive).

int rec_end

End time for the data recording window (inclusive).

int rec_interval_global

Time interval for global data recording/output.

int rec_interval_local

Time interval at which to collect/record local data (in days).

int rec_sites_freq

Fraction of sites to collect local data for (1 is all sites, 10 is 1 in 10 etc).

int set_label

‘Set of repetitions’ index label for output files.

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