Program Listing for File Simulation.h

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#ifndef GENERALMETAPOP_SIMULATION_H
#define GENERALMETAPOP_SIMULATION_H

#include <array>
#include <vector>
#include <string>
#include <filesystem>
#include "constants.h"
#include "Params.h"
#include "InputParams.h"
#include "Point.h"

class Simulation {
public:
    Simulation(InputParams input);
    ~Simulation();
    void set_coords(const std::filesystem::path& filepath);
    void set_boundary_type(BoundaryType boundary);
    void set_dispersal_type(DispersalType disp);
    void set_rainfall(const std::filesystem::path& filepath);
    void set_release_times(const std::filesystem::path& filepath);
    void set_inheritance(InheritanceParams inher_params);
    void run_reps();

private:
    int num_runs;
    int max_t;
    ModelParams *model_params;
    RecordParams *rec_params;
    SineRainfallParams *sine_rainfall_params;
    InputRainfallParams *input_rainfall_params;
    double alpha0_mean;
    double alpha0_variance;
    // additional parameter options
    std::vector<Point> sites_coords;
    std::vector<int> release_sites;
    BoundaryType boundary_type;
    DispersalType disp_type;

    // inheritance
    std::array<std::array<std::array <double, constants::num_gen>, constants::num_gen>, constants::num_gen> inher_fraction;
};

#endif //GENERALMETAPOP_SIMULATION_H